Full refresh report

Generated: 2026-07-01 19:40:42 UTC (2026-07-01T19:40:42.923308+00:00)

Pipeline: python3 scripts/refresh_all.py

1. Scripts run

build_person_resource_links.py
sync_grant_resource_links (from grants.yaml)
build_resource_courses.py
apply_access.py
apply_verification.py
apply_equipment.py
apply_course_links.py
apply_people.py
apply_summary_status.py
generate_unit_indexes.py
generate_equipment_index.py
generate_home_stats.py
normalize_research_topics.py
export_graph_tables.py

2. Scripts skipped

build_grants_layer.py — skipped by default (use --rebuild-grants to regenerate from CSV)

3. Entity counts

Entity	Count
Resources (total)	1599
Resources (non-course)	1145
People	123
Grants	922
Publications	96
Outputs	18
Courses (CUR entries)	454
Equipment resource records	53
Equipment line items	353

4. Edge counts

Edge type	Total	include_in_graph=true	Excluded
person–resource	224	184	40
person–grant	191	191	0
grant–resource	23	19	4
person–publication	110	103	7
publication–resource	17	15	2
person–output	16	15	1
output–resource	12	12	0
course–resource (documented)	186	—	—
facility–facility (documented)	3	—	—

4a. Edge counts by evidence level

Computed at export time from relationship type and include_in_graph (see scripts/person_link_rules.py). Visualization should weight direct > affiliation > topical > administrative; treat excluded and needs_review separately.

Evidence level	All edges
direct	439
affiliation	60
administrative	2
topical	4
excluded	53
needs_review	7

Edge kind	direct	affiliation	topical	administrative	excluded	needs_review
grant–resource	16	0	0	0	4	3
person–grant	191	0	0	0	0	0
person–publication	103	0	0	0	7	0
person–resource	115	60	4	2	40	3
publication–resource	14	0	0	0	2	1

5. Validation errors

(none)

6. Validation warnings

CDM-002: has structured links but zero include_in_graph=true edges
CSH-008: has structured links but zero include_in_graph=true edges
EXT-007: has structured links but zero include_in_graph=true edges
EXT-008: has structured links but zero include_in_graph=true edges
OUT-014: output has no people
OUT-015: output has no people
OUT-016: output has no people

Warning classification

Entity	Warning	Disposition	Rationale
CDM-002	has structured links but zero include_in_graph=true edges	valid_and_intentional	Equipment catalog entries exist but no named individual contact is published on the CDM labs listing; do not invent person-resource edges from co-listing with other labs.
CSH-008	has structured links but zero include_in_graph=true edges	valid_and_intentional	Facility has equipment and documented alternate-service link to UNI-011, but published contact is generic Chemistry IT (CHESupport@depaul.edu) only — no named operator for graph edges.
EXT-007	EXT-007: has structured links but zero include_in_graph=true edges	needs_review	No graph_review note in structured YAML — triage manually.
EXT-008	EXT-008: has structured links but zero include_in_graph=true edges	needs_review	No graph_review note in structured YAML — triage manually.
OUT-014	OUT-014: output has no people	needs_review	No graph_review note in structured YAML — triage manually.
OUT-015	OUT-015: output has no people	needs_review	No graph_review note in structured YAML — triage manually.
OUT-016	OUT-016: output has no people	needs_review	No graph_review note in structured YAML — triage manually.

6a. Publications layer review

Publication–resource links are high-evidence edges; most publications have person–publication links only (see docs/reports/publication-intake-rules.md).

Publications with no publication–resource links: 83 (expected — not an error)
PUB-001, PUB-004, PUB-005, PUB-007, PUB-008, PUB-011, PUB-012, PUB-014, PUB-015, PUB-016, PUB-017, PUB-018 …
Publication–resource links (graph-included, confidence below high): 0
(none)
Publication–resource links (graph-included, vague evidence_text): 0
(none)
Person–publication links excluded from graph: 7
PPL-033: PER-023 → PUB-028 (confidence=medium)
PPL-044: PER-011 → PUB-040 (confidence=high)
PPL-049: PER-010 → PUB-044 (confidence=high)
PPL-051: PER-001 → PUB-046 (confidence=high)
PPL-068: PER-011 → PUB-062 (confidence=high)
PPL-071: PER-010 → PUB-065 (confidence=high)
PPL-072: PER-010 → PUB-066 (confidence=high)

6b. Outputs layer review

Outputs document non-publication artifacts (productions, games, exhibitions, software, etc.); see docs/reports/outputs-layer-plan.md.

Outputs with no output–resource links: 6 (expected for many outputs — not an error)
OUT-006, OUT-007, OUT-012, OUT-013, OUT-017, OUT-018
Output–resource links (graph-included, vague evidence_text): 0
(none)
Person–output links excluded from graph: 1
POL-008: PER-023 → OUT-008 (confidence=medium)
Outputs marked needs_review: 0
(none)

7. Orphan entities

People with no links: 0
Grants with no people: 0
Publications with no people: 0
Outputs with no people: 3
OUT-014, OUT-015, OUT-016
Resources with no people, grants, publications, outputs, courses, or equipment: 1052
CDM-025, CDM-031, COM-002, EXT-012, EXT-013, EXT-014, EXT-017, GRA-001, GRA-002, GRA-003, GRA-004, GRA-005, GRA-006, GRA-007, GRA-008, GRA-009, GRA-010, GRA-011, GRA-012, GRA-013, GRA-014, GRA-015, GRA-016, GRA-017, GRA-018 …

8. Hub resources (graph-included degree ≥ 5)

Resource	Degree	Edge kinds
EXT-016	111	course-resource
CSH-003	28	course-resource, person-resource
CDM-015	22	course-resource, person-resource
MUS-001	19	course-resource, person-resource
CSH-001	19	course-resource, person-resource
CDM-016	16	course-resource, output-resource, person-resource
CDM-004	12	course-resource, person-resource
CDM-001	10	course-resource, output-resource, person-resource
EXT-003	9	person-resource, publication-resource
CDM-011	8	grant-resource, person-resource
TTS-003	8	person-resource
TTS-001	8	course-resource, person-resource
TTS-002	5	person-resource
UNI-003	5	output-resource, person-resource
CSH-017	5	grant-resource, person-resource, publication-resource

9. Graph safety & display policy

people_contacts.enabled = true
include_grant_pis = false (grant_pi hidden from public site)
grant_pi → UNI-001 must have include_in_graph=false
grant_resource → UNI-001 must have include_in_graph=false

10. Weak edge types (sample)

Relationships: affiliated_faculty, collaborator, grant_pi, related_topic

PRL-002: PER-001 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-003: PER-001 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-007: PER-002 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-009: PER-003 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-011: PER-003 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-014: PER-004 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-016: PER-005 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-017: PER-005 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-018: PER-006 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-019: PER-006 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-021: PER-007 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-022: PER-007 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-024: PER-008 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-025: PER-008 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-026: PER-009 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-027: PER-009 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-028: PER-010 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-029: PER-010 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-030: PER-011 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-031: PER-011 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-032: PER-012 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-033: PER-012 → CDM-015 (affiliated_faculty, include_in_graph=True)
PRL-036: PER-013 → CDM-004 (affiliated_faculty, include_in_graph=True)
PRL-037: PER-014 → CDM-005 (affiliated_faculty, include_in_graph=True)
PRL-045: PER-019 → MUS-001 (affiliated_faculty, include_in_graph=True)
PRL-046: PER-020 → MUS-001 (affiliated_faculty, include_in_graph=True)
PRL-055: PER-023 → EXT-005 (collaborator, include_in_graph=False)
PRL-056: PER-023 → EXT-006 (collaborator, include_in_graph=False)
PRL-057: PER-024 → EXT-007 (collaborator, include_in_graph=False)
PRL-058: PER-024 → UNI-003 (collaborator, include_in_graph=True)
PRL-064: PER-026 → EXT-002 (collaborator, include_in_graph=False)
PRL-065: PER-026 → EXT-008 (collaborator, include_in_graph=False)
PRL-068: PER-027 → CDM-014 (affiliated_faculty, include_in_graph=True)
PRL-071: PER-029 → EXT-010 (collaborator, include_in_graph=True)
PRL-077: PER-032 → CSH-005 (affiliated_faculty, include_in_graph=True)
PRL-078: PER-032 → CDM-001 (affiliated_faculty, include_in_graph=True)
PRL-088: PER-037 → UNI-001 (grant_pi, include_in_graph=False)
PRL-089: PER-038 → UNI-001 (grant_pi, include_in_graph=False)
PRL-090: PER-039 → UNI-001 (grant_pi, include_in_graph=False)
PRL-091: PER-040 → CDM-016 (affiliated_faculty, include_in_graph=True)
… and 63 more

11. Recommended human review

Resources with no people/grants/publications/outputs/courses/equipment
Grant layer: grants.yaml is source of truth by default; use --rebuild-grants only when grant_pi entries in people.yaml changed and CSV should re-seed grants

Regenerate: python3 scripts/refresh_all.py · Optional site build: python3 scripts/refresh_all.py --build-site